
Aberrant activation of super enhancer and choline metabolism drive antiandrogen therapy resistance in prostate cancer
- Select a language for the TTS:
- UK English Female
- UK English Male
- US English Female
- US English Male
- Australian Female
- Australian Male
- Language selected: (auto detect) - EN
Play all audios:

ABSTRACT Next generation antiandrogens such as enzalutamide (Enz) are effective initially for the treatment of castration-resistant prostate cancer (CRPC). However, the disease often
relapses and the underlying mechanisms remain elusive. By performing H3-lysine-27 acetylation (H3K27ac) ChIP-seq in Enz-resistant CRPC cells, we identified a group of super enhancers (SEs)
that are abnormally activated in Enz-resistant CRPC cells and associated with enhanced transcription of a subset of tumor promoting genes such as _CHPT1_, which catalyzes phosphatidylcholine
(PtdCho) synthesis and regulates choline metabolism. Increased CHPT1 conferred CRPC resistance to Enz in vitro and in mice. While androgen receptor (AR) primarily binds to a putative
_CHPT1_ enhancer and mediates androgen-dependent expression of _CHPT1_ gene in Enz-sensitive prostate cancer cells, AR binds to a different enhancer within the _CHPT1_ SE locus and
facilities androgen-independent expression of _CHPT1_ in Enz-resistant cells. We further identified a long-non coding RNA transcribed at _CHPT1_ enhancer (also known as enhancer RNA) that
binds to the H3K27ac reader BRD4 and participates in regulating _CHPT1_ SE activity and _CHPT1_ gene expression. Our findings demonstrate that aberrantly activated SE upregulates CHPT1
expression and confers Enz resistance in CRPC, suggesting that SE-mediated expression of downstream effectors such as CHPT1 can be viable targets to overcome Enz resistance in PCa. Access
through your institution Buy or subscribe This is a preview of subscription content, access via your institution ACCESS OPTIONS Access through your institution Subscribe to this journal
Receive 50 print issues and online access $259.00 per year only $5.18 per issue Learn more Buy this article * Purchase on SpringerLink * Instant access to full article PDF Buy now Prices may
be subject to local taxes which are calculated during checkout ADDITIONAL ACCESS OPTIONS: * Log in * Learn about institutional subscriptions * Read our FAQs * Contact customer support
SIMILAR CONTENT BEING VIEWED BY OTHERS A NONCANONICAL AR ADDICTION DRIVES ENZALUTAMIDE RESISTANCE IN PROSTATE CANCER Article Open access 09 March 2021 ESS2 CONTROLS PROSTATE CANCER
PROGRESSION THROUGH RECRUITMENT OF CHROMODOMAIN HELICASE DNA BINDING PROTEIN 1 Article Open access 31 July 2023 CRISPR SCREENING IDENTIFIES CDK12 AS A CONSERVATIVE VULNERABILITY OF PROSTATE
CANCER Article Open access 27 July 2021 REFERENCES * Siegel RL, Miller KD, Jemal A. Cancer statistics, 2018. CA Cancer J Clin. 2018;68:7–30. Article PubMed Google Scholar * Niu Y, Chang
TM, Yeh S, Ma WL, Wang YZ, Chang C. Differential androgen receptor signals in different cells explain why androgen-deprivation therapy of prostate cancer fails. Oncogene. 2010;29:3593–604.
Article CAS PubMed Google Scholar * Tran C, Ouk S, Clegg NJ, Chen Y, Watson PA, Arora V, et al. Development of a second-generation antiandrogen for treatment of advanced prostate cancer.
Science. 2009;324:787–90. Article CAS PubMed PubMed Central Google Scholar * Shore ND, Chowdhury S, Villers A, Klotz L, Siemens DR, Phung D, et al. Efficacy and safety of enzalutamide
versus bicalutamide for patients with metastatic prostate cancer (TERRAIN): a randomised, double-blind, phase 2 study. Lancet Oncol. 2016;17:153–63. Article CAS PubMed Google Scholar *
Scher HI, Fizazi K, Saad F, Taplin ME, Sternberg CN, Miller K, et al. Increased survival with enzalutamide in prostate cancer after chemotherapy. N Engl J Med. 2012;367:1187–97. Article CAS
PubMed Google Scholar * Beer TM, Armstrong AJ, Rathkopf DE, Loriot Y, Sternberg CN, Higano CS, et al. Enzalutamide in metastatic prostate cancer before chemotherapy. N Engl J Med.
2014;371:424–33. Article PubMed PubMed Central CAS Google Scholar * Heidenreich A, Chowdhury S, Klotz L, Siemens DR, Villers A, Ivanescu C, et al. Impact of enzalutamide compared with
bicalutamide on quality of life in men with metastatic castration-resistant prostate cancer: additional analyses from the TERRAIN randomised clinical trial. Eur Urol. 2017;71:534–42. Article
CAS PubMed Google Scholar * Li Y, Chan SC, Brand LJ, Hwang TH, Silverstein KA, Dehm SM. Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant
prostate cancer cell lines. Cancer Res. 2013;73:483–9. Article CAS PubMed Google Scholar * Sharp A, Coleman I, Yuan W, Sprenger C, Dolling D, Rodrigues DN, et al. Androgen receptor
splice variant-7 expression emerges with castration resistance in prostate cancer. J Clin Invest. 2019;129:192–208. Article PubMed Google Scholar * Antonarakis ES, Lu C, Wang H, Luber B,
Nakazawa M, Roeser JC, et al. AR-V7 and resistance to enzalutamide and abiraterone in prostate cancer. N Engl J Med. 2014;371:1028–38. Article PubMed PubMed Central CAS Google Scholar *
Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, et al. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell. 2013;153:307–19.
Article CAS PubMed PubMed Central Google Scholar * Khan A, Mathelier A, Zhang X. Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers.
Epigenetics. 2018;13:910–22. Article PubMed PubMed Central Google Scholar * Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-Andre V, Sigova AA, et al. Super-enhancers in the control of cell
identity and disease. Cell. 2013;155:934–47. Article CAS PubMed Google Scholar * Xie JJ, Jiang YY, Jiang Y, Li CQ, Lim MC, An O. et al. Super-enhancer-driven long non-coding RNA
LINC01503, regulated by TP63, is over-expressed and oncogenic in squamous cell carcinoma. Gastroenterology. 2018;154:2137–51. Article CAS PubMed Google Scholar * He Y, Long W, Liu Q.
Targeting super-enhancers as a therapeutic strategy for cancer treatment. Front Pharm. 2019;10:361. Article CAS Google Scholar * Sabari BR, Dall’Agnese A, Boija A, Klein IA, Coffey EL,
Shrinivas K, et al. Coactivator condensation at super-enhancers links phase separation and gene control. Science. 2018;361:eaar3958. Article PubMed PubMed Central CAS Google Scholar *
Zuber V, Bettella F, Witoelar A, Consortium P, Cruk G, Consortium B, et al. Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility
loci in prostate and breast cancer. BMC Genomics. 2017;18:270. Article PubMed PubMed Central CAS Google Scholar * Di Micco R, Fontanals-Cirera B, Low V, Ntziachristos P, Yuen SK, Lovell
CD, et al. Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associated pluripotency genes. Cell Rep. 2014;9:234–47. Article PubMed
PubMed Central CAS Google Scholar * Sengupta S, George RE. Super-enhancer-driven transcriptional dependencies in cancer. Trends Cancer. 2017;3:269–81. Article CAS PubMed PubMed Central
Google Scholar * Filippakopoulos P, Qi J, Picaud S, Shen Y, Smith WB, Fedorov O, et al. Selective inhibition of BET bromodomains. Nature. 2010;468:1067–73. CAS PubMed PubMed Central
Google Scholar * Loven J, Hoke HA, Lin CY, Lau A, Orlando DA, Vakoc CR, et al. Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell. 2013;153:320–34. Article CAS
PubMed PubMed Central Google Scholar * Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet. 2009;10:155–9. Article CAS PubMed Google
Scholar * Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, et al. Widespread transcription at neuronal activity-regulated enhancers. Nature. 2010;465:182–7. Article CAS PubMed PubMed
Central Google Scholar * Mousavi K, Zare H, Dell’orso S, Grontved L, Gutierrez-Cruz G, Derfoul A, et al. eRNAs promote transcription by establishing chromatin accessibility at defined
genomic loci. Mol Cell. 2013;51:606–17. Article CAS PubMed PubMed Central Google Scholar * Katz-Brull R, Margalit R, Degani H. Differential routing of choline in implanted breast cancer
and normal organs. Magn Reson Med. 2001;46:31–8. Article CAS PubMed Google Scholar * Rohrschneider LR, Boutwell RK. The early stimulation of phospholipid metabolism by
12-0-tetradecanoyl-phorbol-13-acetate and its specificity for tumor promotion. Cancer Res. 1973;33:1945–52. CAS PubMed Google Scholar * Wertz PW, Mueller GC. Rapid stimulation of
phospholipid metabolism in bovine lymphocytes by tumor-promoting phorbol esters. Cancer Res. 1978;38:2900–4. CAS PubMed Google Scholar * Glunde K, Bhujwalla ZM, Ronen SM. Choline
metabolism in malignant transformation. Nat Rev Cancer. 2011;11:835–48. Article CAS PubMed PubMed Central Google Scholar * Ackerstaff E, Glunde K, Bhujwalla ZM. Choline phospholipid
metabolism: a target in cancer cells? J Cell Biochem. 2003;90:525–33. Article CAS PubMed Google Scholar * Glunde K, Jie C, Bhujwalla ZM. Molecular causes of the aberrant choline
phospholipid metabolism in breast cancer. Cancer Res. 2004;64:4270–6. Article CAS PubMed Google Scholar * Ting YL, Sherr D, Degani H. Variations in energy and phospholipid metabolism in
normal and cancer human mammary epithelial cells. Anticancer Res. 1996;16:1381–8. CAS PubMed Google Scholar * Jia M, Andreassen T, Jensen L, Bathen TF, Sinha I, Gao H, et al. Estrogen
receptor alpha promotes breast cancer by reprogramming choline metabolism. Cancer Res. 2016;76:5634–46. Article CAS PubMed Google Scholar * Chatterjee D, Mukherjee S, Das SK. Regulation
of cholinephosphotransferase by thyroid hormone. Biochem Biophys Res Commun. 2001;282:861–4. Article CAS PubMed Google Scholar * Cho WK, Spille JH, Hecht M, Lee C, Li C, Grube V, et al.
Mediator and RNA polymerase II clusters associate in transcription-dependent condensates. Science. 2018;361:412–5. Article CAS PubMed PubMed Central Google Scholar * Chandrashekar DS,
Bashel B, SAH Balasubramanya, Creighton CJ, Ponce-Rodriguez I, Chakravarthi B, et al. UALCAN: a portal for facilitating tumor subgroup gene expression and survival analyses. Neoplasia.
2017;19:649–58. Article CAS PubMed PubMed Central Google Scholar * Stelloo S, Bergman AM, Zwart W. Androgen receptor enhancer usage and the chromatin regulatory landscape in human
prostate cancers. Endocr. Relat. Cancer. 2019;26:R267–85. Article CAS PubMed Google Scholar * Robinson DR, Wu YM, Lonigro RJ, Vats P, Cobain E, Everett J, et al. Integrative clinical
genomics of metastatic cancer. Nature. 2017;548:297–303. Article CAS PubMed PubMed Central Google Scholar * Robinson D, Van Allen EM, Wu YM, Schultz N, Lonigro RJ, Mosquera JM, et al.
Integrative clinical genomics of advanced prostate cancer. Cell. 2015;161:1215–28. Article CAS PubMed PubMed Central Google Scholar * Abida W, Cyrta J, Heller G, Prandi D, Armenia J,
Coleman I, et al. Genomic correlates of clinical outcome in advanced prostate cancer. Proc Natl Acad Sci USA. 2019;116:11428–36. Article CAS PubMed PubMed Central Google Scholar *
Cancer Genome Atlas Research N. The molecular taxonomy of primary prostate cancer. Cell. 2015;163:1011–25. Article CAS Google Scholar * Kohli M, Wang L, Xie F, Sicotte H, Yin P, Dehm SM,
et al. Mutational landscapes of sequential prostate metastases and matched patient derived xenografts during enzalutamide therapy. PLoS ONE. 2015;10:e0145176. Article PubMed PubMed Central
CAS Google Scholar * Lin D, Wyatt AW, Xue H, Wang Y, Dong X, Haegert A, et al. High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development.
Cancer Res. 2014;74:1272–83. Article CAS PubMed Google Scholar * Asangani IA, Dommeti VL, Wang X, Malik R, Cieslik M, Yang R, et al. Therapeutic targeting of BET bromodomain proteins in
castration-resistant prostate cancer. Nature. 2014;510:278–82. Article CAS PubMed PubMed Central Google Scholar * Miquel K, Pradines A, Terce F, Selmi S, Favre G. Competitive inhibition
of choline phosphotransferase by geranylgeraniol and farnesol inhibits phosphatidylcholine synthesis and induces apoptosis in human lung adenocarcinoma A549 cells. J Biol Chem.
1998;273:26179–86. Article CAS PubMed Google Scholar * Anthony ML, Zhao M, Brindle KM. Inhibition of phosphatidylcholine biosynthesis following induction of apoptosis in HL-60 cells. J
Biol Chem. 1999;274:19686–92. Article CAS PubMed Google Scholar * Ramos B, El Mouedden M, Claro E, Jackowski S. Inhibition of CTP:phosphocholine cytidylyltransferase by C(2)-ceramide and
its relationship to apoptosis. Mol Pharm. 2002;62:1068–75. Article CAS Google Scholar * Doroshow DB, Eder JP, LoRusso PM. BET inhibitors: a novel epigenetic approach. Ann Oncol.
2017;28:1776–87. Article CAS PubMed Google Scholar * Chapuy B, McKeown MR, Lin CY, Monti S, Roemer MG, Qi J, et al. Discovery and characterization of super-enhancer-associated
dependencies in diffuse large B cell lymphoma. Cancer Cell. 2013;24:777–90. Article CAS PubMed PubMed Central Google Scholar * Zanconato F, Battilana G, Forcato M, Filippi L, Azzolin L,
Manfrin A, et al. Transcriptional addiction in cancer cells is mediated by YAP/TAZ through BRD4. Nat Med. 2018;24:1599–610. Article CAS PubMed PubMed Central Google Scholar * Sen P,
Lan Y, Li CY, Sidoli S, Donahue G, Dou Z. et al. Histone acetyltransferase p300 induces de novo super-enhancers to drive cellular senescence. Mol Cell. 2019;73:684–98. Article CAS PubMed
PubMed Central Google Scholar * Larue RC, Plumb MR, Crowe BL, Shkriabai N, Sharma A, DiFiore J, et al. Bimodal high-affinity association of Brd4 with murine leukemia virus integrase and
mononucleosomes. Nucleic Acids Res. 2014;42:4868–81. Article CAS PubMed PubMed Central Google Scholar * Kvaratskhelia M, Sharma A, Larue RC, Serrao E, Engelman A. Molecular mechanisms
of retroviral integration site selection. Nucleic Acids Res. 2014;42:10209–25. Article CAS PubMed PubMed Central Google Scholar * Hajmirza A, Emadali A, Gauthier A, Casasnovas O,
Gressin R, Callanan MB BET Family Protein BRD4: An Emerging Actor in NFkappaB Signaling in Inflammation and Cancer. Biomedicines 2018;6. * Donati B, Lorenzini E, Ciarrocchi A. BRD4 and
cancer: going beyond transcriptional regulation. Mol Cancer. 2018;17:164. Article CAS PubMed PubMed Central Google Scholar * Lee TI, Young RA. Transcriptional regulation and its
misregulation in disease. Cell. 2013;152:1237–51. Article CAS PubMed PubMed Central Google Scholar * Hah N, Benner C, Chong LW, Yu RT, Downes M, Evans RM. Inflammation-sensitive super
enhancers form domains of coordinately regulated enhancer RNAs. Proc Natl Acad Sci USA. 2015;112:E297–302. Article CAS PubMed PubMed Central Google Scholar * Wang D, Garcia-Bassets I,
Benner C, Li W, Su X, Zhou Y, et al. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature. 2011;474:390–4. Article CAS PubMed PubMed Central
Google Scholar * Core LJ, Waterfall JJ, Lis JT. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science. 2008;322:1845–8. Article CAS PubMed
PubMed Central Google Scholar * Beagrie RA, Pombo A. Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription. Bioessays. 2016;38:881–93.
Article CAS PubMed Google Scholar * Ko JY, Oh S, Yoo KH. Functional enhancers as master regulators of tissue-specific gene regulation and cancer development. Mol Cells. 2017;40:169–77.
CAS PubMed PubMed Central Google Scholar * Lunde BM, Moore C, Varani G. RNA-binding proteins: modular design for efficient function. Nat Rev Mol Cell Biol. 2007;8:479–90. Article CAS
PubMed PubMed Central Google Scholar * Hentze MW, Castello A, Schwarzl T, Preiss T. A brave new world of RNA-binding proteins. Nat Rev Mol Cell Biol. 2018;19:327–41. Article CAS PubMed
Google Scholar * Zhao Y, Wang L, Ren S, Wang L, Blackburn PR, McNulty MS, et al. Activation of P-TEFb by androgen receptor-regulated enhancer RNAs in castration-resistant prostate cancer.
Cell Rep. 2016;15:599–610. Article CAS PubMed PubMed Central Google Scholar Download references ACKNOWLEDGEMENTS This work was supported in part by the Mayo Clinic Foundation (to HH)
and the National Natural Science Foundation of China (81972654 to SW), Tianjin International Student Science and Technology Activities Launched Project (20160014 to SW), and Tianjin science
and technology commission (18JCZDJC34800 to CQ). AUTHOR INFORMATION AUTHORS AND AFFILIATIONS * Department of Urology, The Second Hospital of Tianjin Medical University, Tianjin Institute of
Urology, Tianjin Medical University, Tianjin, China Simeng Wen, Changyi Quan & Yuanjie Niu * Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine and
Science, Rochester, MN, USA Simeng Wen, Yundong He & Haojie Huang * Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic College of Medicine and Science,
Rochester, MN, USA Liewei Wang * Department of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine and Science, Scottsdale, AZ, USA Jun Zhang * Department of Urology, Mayo
Clinic College of Medicine and Science, Rochester, MN, USA Haojie Huang * Mayo Clinic Cancer Center, Mayo Clinic College of Medicine and Science, Rochester, MN, USA Haojie Huang Authors *
Simeng Wen View author publications You can also search for this author inPubMed Google Scholar * Yundong He View author publications You can also search for this author inPubMed Google
Scholar * Liewei Wang View author publications You can also search for this author inPubMed Google Scholar * Jun Zhang View author publications You can also search for this author inPubMed
Google Scholar * Changyi Quan View author publications You can also search for this author inPubMed Google Scholar * Yuanjie Niu View author publications You can also search for this author
inPubMed Google Scholar * Haojie Huang View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS HH, YN, and CQ conceived the study. SW and YH
generated reagents and conducted experiment design and execution, data collection and data analysis. LW and JZ acquired patient specimens and supervised IHC analysis. HH, SW, YN, and CQ
wrote the manuscript. CORRESPONDING AUTHORS Correspondence to Changyi Quan, Yuanjie Niu or Haojie Huang. ETHICS DECLARATIONS CONFLICT OF INTEREST The authors declare that they have no
conflict of interest. ETHICS The patient sample study was approved by the Mayo Clinic Institutional Review Board. The mouse studies were approved by the IACUC at Mayo Clinic. ADDITIONAL
INFORMATION PUBLISHER’S NOTE Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. SUPPLEMENTARY INFORMATION SUPPLEMENTARY
INFORMATION SUPPLEMENTARY TABLE S1 SUPPLEMENTARY TABLE S2 SUPPLEMENTARY TABLE S3 SUPPLEMENTARY FIGURE S1 SUPPLEMENTARY FIGURE S2 SUPPLEMENTARY FIGURE S3 RIGHTS AND PERMISSIONS Reprints and
permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Wen, S., He, Y., Wang, L. _et al._ Aberrant activation of super enhancer and choline metabolism drive antiandrogen therapy resistance in
prostate cancer. _Oncogene_ 39, 6556–6571 (2020). https://doi.org/10.1038/s41388-020-01456-z Download citation * Received: 27 June 2020 * Revised: 20 August 2020 * Accepted: 02 September
2020 * Published: 11 September 2020 * Issue Date: 15 October 2020 * DOI: https://doi.org/10.1038/s41388-020-01456-z SHARE THIS ARTICLE Anyone you share the following link with will be able
to read this content: Get shareable link Sorry, a shareable link is not currently available for this article. Copy to clipboard Provided by the Springer Nature SharedIt content-sharing
initiative