Significance of abnormal 53bp1 expression as a novel molecular pathologic parameter of follicular-shaped b-cell lymphoid lesions in human digestive tract

Significance of abnormal 53bp1 expression as a novel molecular pathologic parameter of follicular-shaped b-cell lymphoid lesions in human digestive tract


Play all audios:


ABSTRACT The digestive tract is a common site of extranodal malignant lymphomas (MLs) and benign lymphoid lesions (BLs). TP53-binding protein 1 (53BP1) expression has been widely


investigated in class switch recombination but rarely in human lymphoid tissues with respect to tumorigenesis. We previously reported that immunofluorescence (IF) analysis of 53BP1 nuclear


foci (NF), reflecting DNA double strand breaks, is useful for estimating genomic instability in different tumor types. In this study, we evaluated the potential of IF-based analysis of 53BP1


expression in differentiating MLs from BLs. We examined 231 biopsied tissue samples of primary MLs and BLs in the digestive tract. The 53BP1 immunoreactivity pattern was determined by


multicolor IF. Compared to BLs, MLs showed a high frequency of abnormal 53BP1 expression (_p_ < 0.0001). Statistically, abnormal 53BP1 expression is an effective test for distinguishing


follicular lymphomas from BLs (specificity 98.6%, sensitivity 86.8%) and for distinguishing small B-cell lymphomas from BLs (specificity 98.3%, sensitivity 77.6%). Furthermore, a high


frequency of abnormal 53BP1 expression was associated with “high-risk” MALT lymphomas, which exhibited t(11;18)(q21;21) (_p_ = 0.0145). Collectively, these results suggest that IF-based


analysis of 53BP1 expression in biopsy samples is a promising technique for diagnosing MLs in the digestive system. SIMILAR CONTENT BEING VIEWED BY OTHERS ASSOCIATION OF PD-L1 POSITIVITY


WITH EPSTEIN BARR VIRUS INFECTION AND MICROSATELLITE INSTABILITY IN GASTRIC CARCINOMAS WITH LYMPHOID STROMA Article Open access 28 December 2024 TERTIARY LYMPHOID STRUCTURES CRITICAL FOR


PROGNOSIS IN ENDOMETRIAL CANCER PATIENTS Article Open access 16 March 2022 DIFFERENTIAL TUMOR PROTEIN EXPRESSION AT FOLLICULAR LYMPHOMA DIAGNOSIS REVEALS DYSREGULATION OF KEY MOLECULAR


PATHWAYS ASSOCIATED WITH HISTOLOGICAL TRANSFORMATION Article Open access 02 December 2024 INTRODUCTION The gastrointestinal tract is the most common site of extranodal non-Hodgkin


lymphoma1,2,3 as well as a common site of reactive lymphoid hyperplasia because of acquired immune response resulting from continuous exposure to several foreign bodies, including food,


alcohol, chemicals, microbiomes, and other inflammatory substances4,5,6. Biopsy-based differential diagnosis between malignant lymphomas (MLs) and benign lymphoid lesions (BLs) is difficult


because of the limited amount of sample and similar histological features, such as follicular/nodular shapes and/or small cell size, as well as low mitotic activity7. DNA double strand


breaks (DSBs) occur as part of normal B- and T- lymphocyte development during the assembly of variable (V), diversity (D), and joining (J) gene segments into the V-region coding exons via


V(D)J recombination8. Furthermore, class switch recombination, a mechanism that changes a B cell’s production from one type of immunoglobulin to another,9 and secondary V(D)J rearrangement


in mature CD4+ T-cells also involve the generation of DSBs10. Improper repair of DSBs in these processes may induce chromosomal instability, causing tumorigenesis. The tumor suppressor


p53-binding protein 1 (53BP1), a DNA damage response (DDR) molecule possessing a BRCA1 C-terminal domain11,12, rapidly forms nuclear foci (NF) at the site of DNA DSBs in response to ionizing


radiation13,14,15. Therefore, we previously hypothesized that the presence of 53BP1 NF indicates endogenous DNA DSBs and DDR activation in individual cells, and that the 53BP1 expression


pattern may be useful for estimating genomic instability, which is a known hallmark of malignancy, during thyroid, bladder, uterine cervix, and skin carcinogenesis16,17,18,19,20,21. The


53BP1 immunofluorescent pattern was classified into five types: i) stable (none or weak nuclear staining); ii) low DDR (one or two discrete NF); iii) high DDR (HDDR; three or more discrete


NF); iv) large focus (LF; discrete NF ≥ 1 µm); and v) diffuse (intense and heterogenous staining)17. We previously showed that both the HDDR and LF patterns were closely associated with


increased cervical carcinogenesis upon human papilloma virus infection17, and both LF and diffuse patterns were significantly associated with high-grade urothelial carcinoma with chromosomal


instability and poor prognosis18. In the present study, we investigated the 53BP1 expression pattern as an indicator of genome instability, in lymphoid tissues of the GI tract. We observed


considerable differences in the pattern of 53BP1 expression between MLs and BLs, and found that frequently abnormal 53BP1 NF expression was associated with “high-risk” mucosa-associated


lymphoid tissue (MALT) lymphomas exhibiting chromosomal translocation. To the best of our knowledge, this is the first study to reveal differences in the 53BP1 expression pattern during


lymphoid tumorigenesis. RESULTS PROFILES OF EVALUATED CASES Of the 107 cases of primary ML analyzed, 97 cases (90.7%) were the B-cell type and 10 cases (9.3%) were the T-cell type (Table 1).


These T-cell lymphomas consisted of 6 cases of adult T-cell leukemia/lymphoma, one case of enteropathy-associated, and 3 cases of other types. To clarify the association between the type of


53BP1 expression and nuclear grade of T-cell lymphoma, we classified these cases into two groups based on their cell-size, such as a small or large cell size. The sex ratio (M/F) was 1.8,


and the median age (interquartile range: IQR) at diagnosis was 68 (60.5–75) and 70 (62.5–73.8) years in women and men, respectively. The 124 BL cases evaluated in this study included 37


cases (29.8%) of chronic gastritis, 42 cases (33.9%) of non-specific enteritis/colitis or ulcers, 2 cases (1.6%) of ischemic colitis, 4 cases (3.2%) of Crohn’s disease, 17 cases (13.7%) of


ulcerative colitis, 15 cases (12.1%) of adenocarcinoma, 1 case (0.8%) of neuroendocrine tumor, 4 cases (3.2%) of adenoma, and 2 cases (1.6%) of hyperplastic polyp. For BL cases, the sex


ratio (M/F) was 1.4 and median age (IQR) at diagnosis was 59 (41–72.3) and 57.5 (46–68) years in women and men, respectively. 53BP1 EXPRESSION PATTERNS IN MLS We first identified the typical


53BP1 expression patterns in BL and ML tissues and determined the distribution of each pattern in the lymphoid lesions. Stable and low DDR types are considered as normal, whereas high DDR,


large focus, and diffuse patterns are considered as abnormal types (Fig. 1). The frequency of abnormal 53BP1 expression types in the lymphoid lesions is shown in Table 1. Most nuclei in the


BLs [including germinal center (GC), primary follicle (PF), mantle-marginal zone (MM), simple lymphoid accumulation (LA)] were stable or the low DDR type, with a low frequency of the


abnormal type, whereas several nuclei in the mantle cell lymphoma (MCL) and follicular lymphoma (FL) tissues showed abnormal expression patterns (Figs. 2 and 3). We also compared the


abnormal type in different follicular lymphoid lesions (GC, PF, and FLs) and small B-cell type lymphoid lesions (PF, MM, LA, FLs, and MCL). Among the follicular lymphoid lesions, the


frequency of abnormal 53BP1 expression types in FLs [including FL grade 1 (FL1), FL grade 2 (FL2) and FL grade 3A (FL3A)] was significantly higher than that in GC and PF (Table 2; Figs. 2


and 3). Among small B-cell lymphoid lesions, the frequency of abnormal type in both FLs and MCL was significantly higher than that in BLs, except for FL3A vs. LA (Table 3; Figs. 2 and 3).


The frequency of the abnormal patterns in MLs decreased significantly with an increasing histological grade of FLs [FL1 > FL2 > FL3A > diffuse large B cell lymphoma (DLBCL; germinal


center type)] (linear regression model, _p_ < 0.0001; Table 1; Fig. 3). Interestingly, in a case of MCL showing both classical and aggressive (blastoid) types, abnormal expression of


53BP1 was observed in 52.6% of nuclei in the classical type but only 21.9% of nuclei in the blastoid variants (Supplementary Fig. 2). The frequency of abnormal expression in small T-cell


lymphoma was significantly higher than that in both GC and PF (_p_ = 0.0253 and 0.0389, respectively), but not in MM and LA. The frequency of the abnormal type in DLBCL was significantly


higher than that in both GC and PF (_p_ = 0.0004 and 0.0211, respectively) but not in MM and LA. No significant differences were observed in the abnormal type of 53BP1 expression between BLs


and MALT/large T-cell lymphoma (data not shown). Dual-color IF analysis revealed frequent co-localization of 53BP1 expression and other DDR-related molecules, γH2AX (γ histone-2AX) and


p-ATM (phosphorylated ataxia telangiectasia mutated) NF, in the MLs (Fig. 4). RELATIONSHIP BETWEEN ABNORMAL TYPE OF 53BP1 EXPRESSION AND KI-67 LABELING INDEX (LI) IN FLS We investigated the


relationship between Ki-67 LI and grades of FLs and Ki-67 LI and abnormal type of 53BP1 expression. As expected, Ki-67 LI [median (IQR range)] was higher in FL3A [13.8% (12.5–16.8)] than in


FL2 [5.2% (4.3–10.1)] and FL1 [5.0% (2.4–7.1)] (_p_ = 0.0194 and 0.0021, respectively). In contrast, the frequency of an abnormal type of 53BP1 expression was decreased in higher grade FLs,


whereas there was no significant correlation between the frequency of an abnormal type and Ki-67 LI (Spearman correlation coefficient = − 0.26, _p_ = 0.1208). ABNORMAL 53BP1 EXPRESSION


INDICATES OF B-CELL MLS Next, we focused on the ratio of nuclei with an abnormal type of 53BP1 expression as an indicator to distinguish primary B-cell MLs from BLs in the biopsy specimens


and assessed the receiver operating characteristic (ROC) curve. Among follicular lymphoid lesions (GC, PF, and FLs), the area under the curve (AUC) value was 0.942 [95% confidence interval,


0.881–1.000], suggesting that FLs were reliably detected (Fig. 5A). When 27.2% was considered as the cut-off value (Youden’s index, 0.85) for the FL diagnosis, the sensitivity and


specificity were 86.8% and 98.6%, respectively. Furthermore, among small cell lymphoid lesions (PF, MM, LA, FLs, and MCL), the AUC value was 0.892 (95% confidence interval, 0.817–0.968),


suggesting reliable detection of MLs (Fig. 5B). When 33.6% was considered as the cut-off value (Youden’s index, 0.76) for the small-cell ML diagnosis, the sensitivity and specificity were


77.6% and 98.3%, respectively. In addition, among the “large B-cell” group including GC and DLBCL, the AUC value was 0.859 (95% confidence interval, 0.755–0.962). When 22.9% was considered


as the cut-off value (Youden’s index, 0.72) for the large B-cell ML diagnosis, the sensitivity and specificity were 72.4% and 100%, respectively. ASSOCIATION BETWEEN ABNORMAL 53BP1


EXPRESSION, AND CHROMOSOMAL ABERRATIONS AND RESPONSE TO THERAPY IN MALT LYMPHOMAS The results of molecular analyses obtained by fluorescence in situ hybridization (FISH), response to


_Helicobacter pylori_ eradication and radiation therapy, and follow-up data in MALT lymphomas, are summarized in Table 4. Six (31.6%) of the 19 MALT lymphoma cases showed a high frequency of


the abnormal type of 53BP1 expression (more than 33.6%, which is the cut-off value for diagnosing small B-cell type MLs). Interestingly, 5 (83.3%) of these cases showed t(11;18)(q21;q21),


and two showed trisomy of 18q21 (Fig. 6, Table 4). Another case that exhibited a high frequency (44.2%) of the abnormal type also presented a low frequency (less than 10%) of 18q21 trisomy.


Among the 13 cases with a low frequency of the abnormal type, one case exhibited t(11;18)(q21;q21), 9 cases were wild type, and 3 cases showed no detectable signals in FISH analysis.


Statistical analysis revealed a significant association between the abnormal type of 53BP1 expression and chromosomal aberrations (_p_ = 0.0145, Wilcoxon exact test). Therapy and follow-up


data were available for 14 (73.7%) of 19 MALT lymphoma cases, including 5 and 9 of the high and low abnormal type cases, respectively. Among them, spontaneous regression or response to


therapies was confirmed in 2 (40%) of five cases with the high abnormal type and in 7 (77.8%) of nine cases with low abnormal type. Furthermore, among the seven cases with eradication, all


three responders were the low abnormal type. DISCUSSION 53BP1 expression in animal lymphoid tissues or cultured human lymphocytes has been widely investigated in terms of class switch


recombination22,23,24,25,26,27; however, studies of 53BP1 expression in human lymphoid tissues with respect to tumorigenesis are limited. In this study, we determined the difference between


the frequency of abnormal 53BP1 expression in biopsied ML and BL specimens from the gastrointestinal tract. Using irradiated rat thyroid glands, we previously demonstrated that the presence


of DDR-type 53BP1 immunoreactivity was concordant with the induction of DNA DSBs in irradiated follicular cells28. Furthermore, our previous studies involving dual-color IF analysis revealed


frequent co-localization of 53BP1 and γH2AX NF in human thyroid follicular tumors and irradiated rat thyroid glands, suggesting endogenous activation of the DDR pathways in tumor cells as a


hallmark of genome instability28. Thus, we hypothesized that 53BP1 expression is a useful tool for estimating the level of genome instability and malignant potential of human tumors. In


this study, 53BP1 was found to co-localize with other DDR molecules, such as γH2AX and p-ATM NF, in human MLs. DNA DSBs do not only occur in MLs29, but also in the development of B- and


T-cells8,9,10. Although 53BP1 NF may appear in both benign lymphocytes and ML cells, the frequency of abnormal 53BP1 expression in MLs was significantly higher than that in BLs, indicating


an association of altered DDR machinery with lymphoid tumorigenesis as well as other carcinogenesis. We previously showed that an abnormal type of 53BP1 NF was closely associated with


increased carcinogenesis of several organs16,17,18,21; for instance, both LF and diffuse patterns were significantly associated with high-grade urothelial carcinoma with chromosomal


instability and poor prognosis18. This suggests a more universal association with carcinogenesis rather than V(D)J recombination-mediated DSB generation which is specific to lymphoid cells.


This study also revealed a stepwise decrease in the frequency of abnormal type 53BP1 expression with ML progression [FL1 > FL2 > FL3A > DLBCL (germinal center type)]. Additionally,


we observed a 2.4-fold higher frequency of abnormal type 53BP1 expression in the area of classical type compared to in the area of more aggressive blastoid variant in one MCL case. These


findings suggest the involvement of a different type of DDR machinery in more aggressive MLs. Although the precise mechanism underlying this phenomenon remains poorly understood, our result


is consistent with that of a previous study showing that the DDR pathway is impaired in more aggressive tumors, enabling them to escape DNA repair and apoptosis induction30. Therefore,


high-grade MLs may lack the ability to respond to DNA damage, thereby showing increased genome instability and more aggressive phenotypes. Genomic profiling studies have identified the key


pathways activated in the pathogenesis of mature B-cell neoplasms, such as B-cell receptor (BCR) signaling, NOTCH signaling, Toll-like receptor (TLR), phosphoinositide 3 kinase


(PI3K)/AKT/mTOR signaling, and mitogen activated kinase (RAS/MAPK/ERK) pathways31. BCR antigen binding induces the recruitment of Src family kinases and, subsequently, activating


PI3K-related kinases, which are the major transducers of the DNA damage signals, executing functional outcomes in the DDR32. NOTCH signaling provokes an increase in S-phase and directly


regulates the DDR by inactivating ATM, resulting in a decreased level of residual 53BP1 NF, which is crucial for the proliferation of T-cell leukemias33. TLR initiates intracellular


signaling by engaging various cytoplasmic adaptors that acts as a signal transducer, including MYD88. MYD88 mutations results in uncontrolled formation of the MYD88/IL-1 receptor-associated


kinase (IRAK) complex, recruitment of the tumor necrosis factor receptor-associated factor (TRAF) 6 which is an E3 ubiquitin ligase, and constitutive phosphorylation of NF-κB signaling


activation, which can activate MAPK pathway and respond to radiation-induced DNA damage34,35,36. Thus, activation of these pathways can influence 53BP1 expression to enhance lymphomagenesis


through impaired DDR. Histopathological diagnosis of MLs using biopsy samples from the gastrointestinal tract, particularly follicular lesions, is not always easy because of the small size


of the cells and insufficient recognizable features7,37. Immunohistochemistry-based detection of CD10 and BCL2 co-expression is used to diagnose FLs in biopsy samples. However, 20% of FL1/2


and 83% of FL3 have been reported to be negative for CD10 expression38, and 8.8% of FLs have been reported as negative for BCL2 expression39. BCL6 is another marker used to diagnose FLs, but


30.5% of FLs do not show BCL6 expression40. Therefore, we investigated the potential of 53BP1 IF analysis as a useful technique for distinguishing FLs from BLs. The present study proposes a


method for distinguishing follicular-shape B-cell lymphoid lesions, including FL, in biopsy samples from the gastrointestinal tract by a combination of usual immunohistochemistry and 53BP1


IF (Fig. 7). Our results indicate that IF-based analysis of 53BP1 expression is an outstanding diagnostic test for distinguishing FLs (AUC, 0.94; CI, 0.88–1; cut-off, 27.2%) and excellent


diagnostic test for distinguishing small B-cell MLs from BLs (AUC, 0.89; CI, 0.82–0.97; cut-off, 33.6%), according to the previously reported classification41 (Fig. 5). However, the clinical


application of this test has some limitations, such as the need for a fluorescence microscope and training to evaluate the staining results, which require an understanding of morphological


features. Although there was no significant difference between 53BP1 expression in MALT lymphoma and BLs, we found a correlation between the high frequency of the abnormal type (more than


33.6%, cut-off value to diagnose small B-cell MLs) and t(11;18)(q21;q21)/trisomy of 18q21 (_p_ = 0.0145). The incidences of t(11;18)(q21;q21) and trisomy 18 in gastric MALT lymphoma have


been reported as 6–26% and 6%, respectively42. Moreover, cases with t(11;18)(q21;q21) are typically insensitive to _H. pylori_ eradication therapy, suggesting the prognostic significance of


these cases as “higher-risk” as compared with those without43,44,45. We propose that a high level of abnormal type 53BP1 expression is a useful parameter for estimating chromosomal


instability as well as the prognosis in gastric MALT lymphomas. In summary, this retrospective study indicates that the frequency of abnormal type 53BP1 expression in lymphoid proliferative


lesions in biopsy specimens from the gastrointestinal tract is an attractive diagnostic test to distinguish MLs from BLs. Furthermore, the logistic regression model with ROC curve analysis


revealed that the proportion of cells showing an abnormal type of 53BP1 expression by IF analysis is a very effective diagnostic parameter for follicular lymphoid lesions (AUC, 0.94; CI,


0.88–1; cut-off, 27.2%) and for small cell lymphoid lesions (AUC, 0.89; CI, 0.82–0.97; cut-off, 33.6%). Furthermore, we found a stepwise decrease in the frequency of abnormal type with FL


progression, suggesting the involvement of different DDR machinery impairments in aggressive feature of FLs. Additionally, abnormal types of 53BP1 expression appear to be associated with


chromosomal instability, a parameter of prognosis in gastric MALT lymphoma. Thus, IF-based analysis of 53BP1 expression may be a useful tool for distinguishing MLs from BLs in biopsy samples


from the gastrointestinal system. If it is technically possible to automate the quantification of 53BP1 NF by using a computational image analysis system, our method may be useful for


practical diagnosis of follicular lymphoid lesions. METHODS SUBJECTS We analyzed 107 cases of primary MLs in the gastrointestinal tract, diagnosed at hospitals (National Hospital


Organization Nagasaki Medical Center, Nagasaki University Hospital, Isahaya General Hospital) in Nagasaki, Japan, between 2008 and 2019. A total 124 cases of inflammatory diseases or


non-lymphoid tumors in the gastrointestinal tract were also examined as controls for BLs. All available samples were biopsied, formalin-fixed, and paraffin-embedded tissues histologically


showing lymphoid accumulation. The final pathological diagnosis was verified by at least three experienced pathologists following the diagnostic criteria of WHO 2017. This study was


performed retrospectively and in accordance with the tenets of the Declaration of Helsinki. The Ethics Committee of Nagasaki University approved the study (approval date: June 20, 2019;


#15062617-3). The need for informed consent was waived by the Ethics Committee of Nagasaki University. Methods were carried out in accordance with relevant guidelines and regulations. All


patient profiles were anonymized by coding and collectively summarized with the obtained data as final dataset. Detailed information regarding this study is available on our website


(http://www-sdc.med.nagasaki-u.ac.jp/ pathology/research/index.html). Patients were able to opt out of study by following the instructions provided on the faculty website. MULTICOLOR IF


ANALYSES OF 53BP1 EXPRESSION After deparaffinization and antigen retrieval by microwave treatment for 20 min in citrate buffer (pH 6.0), the tissue sections were pre-incubated with 10%


normal goat serum. For triple-color IF, the tissues were incubated with polyclonal rabbit anti-53BP1 antibody (1:1000; Bethyl Laboratories, Montgomery, TX, USA), monoclonal mouse anti-human


BCL-2 antibody (1:50; DakoCytomation, Glostrup, Denmark), and monoclonal mouse anti-human FDC (follicular dendric cell) antibody (CNA.42; 1:200; Life Technologies, Carlsbad, CA, USA). The


samples were then incubated with Alexa Flour 532-conjugated goat anti-rabbit, Alexa Fluor 488-conjugated goat anti-mouse, and Alexa Fluor 594 F(abʹ)-conjugated goat anti-mouse antibodies


(Molecular Probes, Eugene, OR, USA). For dual-color IF, the tissues were incubated with polyclonal rabbit anti-53BP1 antibody (1:1000) and monoclonal mouse anti-γ histone-2AX (γH2AX)


antibody (1:1000; ab26350; Abcam, Cambridge, UK) or with monoclonal mouse anti-ataxia telangiectasia mutated (ATM; phospho S1981) antibody (1:500; ab36810; Abcam). The samples were then


incubated with Alexa Fluor 488-conjugated goat anti-rabbit and Alexa Fluor 594 F(abʹ)-conjugated goat anti-mouse antibodies (Molecular Probes) as appropriate. All slides were mounted using


Vectashield HardSet Mounting Medium containing DAPI (Vector Labs, Burlingame, CA, USA). The stained sections were photographed at 1,000-fold magnification with at least 30 slices per field


using the Z-stack function on a High Standard all-in-one fluorescence microscope (Biorevo BZ-X710; Keyence Japan, Osaka, Japan). This function enabled delineation of all 53BP1 foci


throughout the nucleus. In BLs, triple-color IF images were captured after determining the anatomical structures (Supplementary Fig. 1), such as the germinal center (GC; FDC-positive and


BCL2-negative), mantle-marginal zone (MM; BCL2-positive area surrounding GC), primary follicle (PF; FDC-positive and BCL2-positive), and simple lymphoid accumulation (LA; FDC-negative and


variable BCL2 expression). All signals for 53BP1 expression were measured using the image analysis software provided with the Biorevo BZ-X710 microscope. 53BP1 immunoreactivity was


classified using the definitions as mentioned in the Introduction, according to our previous report17 (Fig. 1). The percentage of nuclei containing each type of expression was calculated for


each case. DUAL-COLOR FISH ANALYSIS OF MALT LYMPHOMA We detected the translocation t(11;18)(q21;q21) by dual-color FISH with Vysis LSI BIRC3/MALT1 probes (Abbott Japan Co. Ltd., Tokyo,


Japan) following the manufacturer’s instructions. Briefly, after deparaffinization and microwave treatment in citrate buffer (pH 6.0), the tissue sections were predigested with 0.075% pepsin


for 20 min at 37 °C, re-fixed in 4% paraformaldehyde for 5 min at 4 °C, and denatured in 70% formamide for 5 min at 73 °C. The tissue sections were incubated with denatured FISH probes,


including SpectrumGreen-labeled BRIC3 and SpectrumOrange-labeled MALT1, at 37 °C for 16 h. The sections were washed in 50% formamide and 2 × standard saline citrate and counterstained with


DAPI (Vector Labs). A minimum of 30 slices per field were visualized and photographed using the Z-stack function of Biorevo BZ-X710 (Keyence Japan). Non-overlapping nuclei of more than 150


cells with signals were evaluated per slide. The proportion of nuclei with one or two fusion signals in total nuclei showing at least one hybridization signal was calculated. STATISTICAL


ANALYSES Continuous variables were expressed as the median and IQR, and the groups were compared using Wilcoxon rank-sum test. A logistic regression model and ROC curve were used to evaluate


the significance of 53BP1 expression using IF as a diagnostic test. An optimal cutoff value was chosen based on the highest Youden’s index. All statistical analyses were performed using the


SAS software (version 9.4, SAS Institute Inc., Cary, NC, USA) with a statistical significance level of 0.05. The boxplots and ROC curves were created in R statistical language version 3.6.1


by using ggplots, dplyr, and pROC packages. CHANGE HISTORY * _ 09 JUNE 2021 A Correction to this paper has been published: https://doi.org/10.1038/s41598-021-91766-3 _ REFERENCES * Wu,


X.-C., Andrews, P., Chen, V. W. & Groves, F. D. Incidence of extranodal non-Hodgkin lymphomas among whites, blacks, and Asians/Pacific Islanders in the United States: Anatomic site and


histology differences. _Cancer Epidemiol._ 33, 337–346 (2009). Article  Google Scholar  * Zucca, E., Roggero, E., Bertoni, F. & Cavalli, F. Primary extranodal non-Hodgkin's


lymphomas. Part 1: Gastrointestinal, cutaneous and genitourinary lymphomas. _Ann. Oncol._ 8, 727–737 (1997). * Krol, A. _et al._ Primary extranodal non-Hodgkin’s lymphoma (NHL): The impact


of alternative definitions tested in the Comprehensive Cancer Centre West population-based NHL registry. _Ann. Oncol._ 14, 131–139 (2003). Article  CAS  Google Scholar  * Finke, D. in


_Seminars in Immunopathology._ 151–169 (Springer). * Taylor, R. T. & Williams, I. R. Lymphoid organogenesis in the intestine. _Immunol. Res._ 33, 167–181 (2005). Article  CAS  Google


Scholar  * Jaskiewicz, K. & Kobierska, G. Lymphoid aggregates in gastric biopsies: Relationship to other mucosal lesions. _Arch. Immunol. Ther. Exp._ 3, 201–204 (2000). Google Scholar  *


Iwamuro, M. _et al._ Diagnostic accuracy of endoscopic biopsies for the diagnosis of gastrointestinal follicular lymphoma: A clinicopathologic study of 48 patients. _Ann. Diagn. Pathol._


18, 99–103 (2014). Article  Google Scholar  * Bassing, C. H., Swat, W. & Alt, F. W. The mechanism and regulation of chromosomal V (D) J recombination. _Cell_ 109, S45–S55 (2002). Article


  CAS  Google Scholar  * Honjo, T., Kinoshita, K. & Muramatsu, M. Molecular mechanism of class switch recombination: Linkage with somatic hypermutation. _Annu. Rev. Immunol._ 20, 165–196


(2002). Article  CAS  Google Scholar  * Li, T. T., Han, S., Cubbage, M. & Zheng, B. Continued expression of recombination-activating genes and TCR gene recombination in human peripheral


T cells. _Eur. J. Immunol._ 32, 2792–2799 (2002). Article  CAS  Google Scholar  * Bork, P. _et al._ A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint


proteins. _FASEB J._ 11, 68–76 (1997). Article  CAS  Google Scholar  * Joo, W. S. _et al._ Structure of the 53BP1 BRCT region bound to p53 and its comparison to the Brca1 BRCT structure.


_Genes Dev._ 16, 583–593 (2002). Article  CAS  Google Scholar  * Anderson, L., Henderson, C. & Adachi, Y. Phosphorylation and rapid relocalization of 53BP1 to nuclear foci upon DNA


damage. _Mol. Cell. Biol._ 21, 1719–1729 (2001). Article  CAS  Google Scholar  * Ward, I. M., Minn, K., Jorda, K. G. & Chen, J. Accumulation of checkpoint protein 53BP1 at DNA breaks


involves its binding to phosphorylated histone H2AX. _J. Biol. Chem._ 278, 19579–19582 (2003). Article  CAS  Google Scholar  * Rappold, I., Iwabuchi, K., Date, T. & Chen, J. Tumor


suppressor p53 binding protein 1 (53BP1) is involved in DNA damage-signaling pathways. _J. Cell Biol._ 153, 613–620 (2001). Article  CAS  Google Scholar  * Nakashima, M. _et al._ Foci


formation of P53-binding protein 1 in thyroid tumors: Activation of genomic instability during thyroid carcinogenesis. _Int. J. Cancer_ 122, 1082–1088 (2008). Article  CAS  Google Scholar  *


Matsuda, K. _et al._ Significance of p53-binding protein 1 nuclear foci in uterine cervical lesions: Endogenous DNA double strand breaks and genomic instability during carcinogenesis.


_Histopathology_ 59, 441–451 (2011). Article  Google Scholar  * Matsuda, K. _et al._ Expression pattern of p53-binding protein 1 as a new molecular indicator of genomic instability in


bladder urothelial carcinoma. _Sci. Rep._ 8, 1–9 (2018). Google Scholar  * Mussazhanova, Z. _et al._ Association between p53-binding protein 1 expression and genomic instability in oncocytic


follicular adenoma of the thyroid. _Endocr. J._ EJ15–0629 (2016). * Mussazhanova, Z. _et al._ Significance of p53-binding protein 1 (53 BP 1) expression in thyroid papillary microcarcinoma:


Association with BRAFV 600E mutation status. _Histopathology_ 63, 726–734 (2013). PubMed  Google Scholar  * Naruke, Y. _et al._ Alteration of p53-binding protein 1 expression during skin


carcinogenesis: association with genomic instability. _Cancer Sci._ 99, 946–951 (2008). Article  CAS  Google Scholar  * Stavnezer, J., Guikema, J. E. & Schrader, C. E. Mechanism and


regulation of class switch recombination. _Annu. Rev. Immunol._ 26 (2008). * Manis, J. P. _et al._ 53BP1 links DNA damage-response pathways to immunoglobulin heavy chain class-switch


recombination. _Nat. Immunol._ 5, 481–487 (2004). Article  CAS  Google Scholar  * Callén, E. _et al._ Essential role for DNA-PKcs in DNA double-strand break repair and apoptosis in


ATM-deficient lymphocytes. _Mol. Cell_ 34, 285–297 (2009). Article  Google Scholar  * Ward, I. M. _et al._ 53BP1 is required for class switch recombination. _J. Cell Biol._ 165, 459–464


(2004). Article  CAS  Google Scholar  * Bothmer, A. _et al._ Regulation of DNA end joining, resection, and immunoglobulin class switch recombination by 53BP1. _Mol. Cell_ 42, 319–329 (2011).


Article  CAS  Google Scholar  * Jankovic, M. _et al._ 53BP1 alters the landscape of DNA rearrangements and suppresses AID-induced B cell lymphoma. _Mol. Cell_ 49, 623–631 (2013). Article 


CAS  Google Scholar  * Otsubo, R. _et al._ A novel diagnostic method for thyroid follicular tumors based on immunofluorescence analysis of p53-binding protein 1 expression: Detection of


genomic instability. _Thyroid_ 29, 657–665 (2019). Article  CAS  Google Scholar  * Robbiani, D. F. _et al._ AID produces DNA double-strand breaks in non-Ig genes and mature B cell lymphomas


with reciprocal chromosome translocations. _Mol. Cell_ 36, 631–641 (2009). Article  CAS  Google Scholar  * Bartkova, J. _et al._ DNA damage response as a candidate anti-cancer barrier in


early human tumorigenesis. _Nature_ 434, 864–870 (2005). Article  ADS  CAS  Google Scholar  * Onaindia, A., Medeiros, L. J. & Patel, K. P. Clinical utility of recently identified


diagnostic, prognostic, and predictive molecular biomarkers in mature B-cell neoplasms. _Mod. Pathol._ 30, 1338–1366 (2017). Article  CAS  Google Scholar  * Lim, K. H., Yang, Y. &


Staudt, L. M. Pathogenetic importance and therapeutic implications of NF-κB in lymphoid malignancies. _Immunol. Rev._ 246, 359–378 (2012). Article  Google Scholar  * Adamowicz, M.,


Vermezovic, J. & di Fagagna, F. d. A. NOTCH1 inhibits activation of ATM by impairing the formation of an ATM-FOXO3a-KAT5/Tip60 complex. _Cell Rep._ 16, 2068–2076 (2016). * Ngo, V. N. _et


al._ Oncogenically active MYD88 mutations in human lymphoma. _Nature_ 470, 115–119 (2011). Article  ADS  CAS  Google Scholar  * Treon, S. P. _et al._ MYD88 L265P somatic mutation in


Waldenström’s macroglobulinemia. _N. Engl. J. Med._ 367, 826–833 (2012). Article  CAS  Google Scholar  * Havaki, S. _et al._ The role of oxidative DNA damage in radiation induced bystander


effect. _Cancer Lett._ 356, 43–51 (2015). Article  CAS  Google Scholar  * Burke, J. S. Lymphoproliferative disorders of the gastrointestinal tract: A review and pragmatic guide to diagnosis.


_Arch. Pathol. Lab. Med._ 135, 1283–1297 (2011). Article  Google Scholar  * Eshoa, C. _et al._ Decreased CD10 expression in grade III and in interfollicular infiltrates of follicular


lymphomas. _Am. J. Clin. Pathol._ 115, 862–867 (2001). Article  CAS  Google Scholar  * Guo, Y. _et al._ Low-grade follicular lymphoma with t (14; 18) presents a homogeneous disease entity


otherwise the rest comprises minor groups of heterogeneous disease entities with Bcl2 amplification, Bcl6 translocation or other gene aberrances. _Leukemia_ 19, 1058–1063 (2005). Article 


CAS  Google Scholar  * Karube, K. _et al._ CD10− MUM1+ follicular lymphoma lacks BCL2 gene translocation and shows characteristic biologic and clinical features. _Blood_ 109, 3076–3079


(2007). Article  CAS  Google Scholar  * Hosmer, D. W. Assessing the fit of the model. _Appl. Logist. Regress._ 143–202 (2000). * Swerdlow, S., Cook, J. & Sohani, A. _Lymphoplasmacytic


Lymphoma: WHO Classification of Tumours of Haematopoietic and Lymphoid Tissues_. 4th edn 232–235 (World Health Organization, Lyon, International Agency for Research on Cancer, 2017). * Liu,


H. _et al._ T (11; 18) is a marker for all stage gastric MALT lymphomas that will not respond to H. pylori eradication. _Gastroenterology_ 122, 1286–1294 (2002). * Inagaki, H. _et al._


Gastric MALT lymphomas are divided into three groups based on responsiveness to _Helicobacter pylori_ eradication and detection of API2-MALT1 fusion. _Am. J. Surg. Pathol._ 28, 1560–1567


(2004). Article  Google Scholar  * Toyoda, K. _et al._ Mucosa-associated lymphoid tissue lymphoma with t (11; 18)(q21; q21) translocation: long-term follow-up results. _Ann. Hematol._ 98,


1675–1687 (2019). Article  CAS  Google Scholar  Download references ACKNOWLEDGEMENTS This work was supported in part by the Atomic Bomb Disease Institute, Nagasaki University; Joint Research


by Hiroshima University, Nagasaki University, and Fukushima Medical University Research Base for Radiation Accidents and Medical Science; and by Takeda Science Foundation. We would like to


thank Dr. Mutsumi Matsuyama, Dr. Yuko Akazawa, Department of Tumor and Diagnostic Pathology, Atomic Bomb Disease Institute, Nagasaki University, Dr. Shiro Miura, Department of Pathology,


National Hospital Organization Nagasaki Medical Center, Dr. Pham Hoang Ngoc Hoa and Dr. Kris Elkey Lami, Department of Pathology, Nagasaki University Hospital for their assistance in sample


collection; and Mr. Takahiro Motoyama for technical support. AUTHOR INFORMATION AUTHORS AND AFFILIATIONS * Department of Tumor and Diagnostic Pathology, Atomic Bomb Disease Institute,


Nagasaki University Graduate School of Biomedical Sciences, 1-12-4 Sakamoto, Nagasaki, 852-8523, Japan Thi My Hanh Luong, Katsuya Matsuda, Hirokazu Kurohama & Masahiro Nakashima *


Department of Pathology, Local Incorporated Administrative Agency Sasebo City General Hospital, Sasebo, Japan Daisuke Niino * Department of Pathology, National Hospital Organization Nagasaki


Medical Center, Omura, Japan Masahiro Ito Authors * Thi My Hanh Luong View author publications You can also search for this author inPubMed Google Scholar * Katsuya Matsuda View author


publications You can also search for this author inPubMed Google Scholar * Daisuke Niino View author publications You can also search for this author inPubMed Google Scholar * Hirokazu


Kurohama View author publications You can also search for this author inPubMed Google Scholar * Masahiro Ito View author publications You can also search for this author inPubMed Google


Scholar * Masahiro Nakashima View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS H.L. designed the study, collected samples, performed the


experiments, contributed to pathological diagnosis, collected and interpreted staining results, analyzed the data, and drafted the manuscripts. K.M. contributed to experiment design and


interpretation of staining results. D.N. contributed to specimen collection and performed the final pathological diagnosis. H.K. contributed to collection of cases and clinical information.


M.I. contributed to pathological diagnosis. M.N. is the corresponding author, contributed to pathological diagnosis and collection of clinical information, and revised the manuscript.


CORRESPONDING AUTHOR Correspondence to Masahiro Nakashima. ETHICS DECLARATIONS COMPETING INTERESTS The authors declare no competing interests. ADDITIONAL INFORMATION PUBLISHER'S NOTE


Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. SUPPLEMENTARY INFORMATION SUPPLEMENTARY FIGURES. RIGHTS AND PERMISSIONS


OPEN ACCESS This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or


format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or


other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not


included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission


directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Luong,


T.M.H., Matsuda, K., Niino, D. _et al._ Significance of abnormal 53BP1 expression as a novel molecular pathologic parameter of follicular-shaped B-cell lymphoid lesions in human digestive


tract. _Sci Rep_ 11, 3074 (2021). https://doi.org/10.1038/s41598-021-82867-0 Download citation * Received: 28 June 2020 * Accepted: 19 January 2021 * Published: 04 February 2021 * DOI:


https://doi.org/10.1038/s41598-021-82867-0 SHARE THIS ARTICLE Anyone you share the following link with will be able to read this content: Get shareable link Sorry, a shareable link is not


currently available for this article. Copy to clipboard Provided by the Springer Nature SharedIt content-sharing initiative