Generation of tolerogenic antigen-presenting cells in vivo via the delivery of mrna encoding pdl1 within lipid nanoparticles

Generation of tolerogenic antigen-presenting cells in vivo via the delivery of mrna encoding pdl1 within lipid nanoparticles


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ABSTRACT Tolerogenic antigen-presenting cells (APCs) are promising as therapeutics for suppressing T cell activation in autoimmune diseases. However, the isolation and ex vivo manipulation


of autologous APCs is costly, and the process is customized for each patient. Here we show that tolerogenic APCs can be generated in vivo by delivering, via lipid nanoparticles, messenger


RNA coding for the inhibitory protein programmed death ligand 1. We optimized a lipid-nanoparticle formulation to minimize its immunogenicity by reducing the molar ratio of nitrogen atoms on


the ionizable lipid and the phosphate groups on the encapsulated mRNA. In mouse models of rheumatoid arthritis and ulcerative colitis, subcutaneous delivery of nanoparticles encapsulating


mRNA encoding programmed death ligand 1 reduced the fraction of activated T cells, promoted the induction of regulatory T cells and effectively prevented disease progression. The method may


allow for the engineering of APCs that target specific autoantigens or that integrate additional inhibitory molecules. Access through your institution Buy or subscribe This is a preview of


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ACCESS OPTIONS: * Log in * Learn about institutional subscriptions * Read our FAQs * Contact customer support SIMILAR CONTENT BEING VIEWED BY OTHERS A NANOPARTICLE VACCINE THAT TARGETS


NEOANTIGEN PEPTIDES TO LYMPHOID TISSUES ELICITS ROBUST ANTITUMOR T CELL RESPONSES Article Open access 12 November 2020 A NANOVACCINE FOR ANTIGEN SELF-PRESENTATION AND IMMUNOSUPPRESSION


REVERSAL AS A PERSONALIZED CANCER IMMUNOTHERAPY STRATEGY Article 11 April 2022 BIOMIMETIC NANOVACCINE-MEDIATED MULTIVALENT IL-15 SELF-TRANSPRESENTATION (MIST) FOR POTENT AND SAFE CANCER


IMMUNOTHERAPY Article Open access 24 October 2023 DATA AVAILABILITY The data supporting the results in this study are available within the paper and its Supplementary Information. The raw


and analysed datasets generated during the study are available for research purposes from the corresponding authors on reasonable request. Source data are provided with this paper.


REFERENCES * Fugger, L., Jensen, L. T. & Rossjohn, J. Challenges, progress, and prospects of developing therapies to treat autoimmune diseases. _Cell_ 181, 63–80 (2020). CAS  PubMed 


Google Scholar  * Conrad, N. et al. Incidence, prevalence, and co-occurrence of autoimmune disorders over time and by age, sex, and socioeconomic status: a population-based cohort study of


22 million individuals in the UK. _Lancet_ 401, 1878–1890 (2023). PubMed  Google Scholar  * McKinney, E. F., Lee, J. C., Jayne, D. R., Lyons, P. A. & Smith, K. G. T-cell exhaustion,


co-stimulation and clinical outcome in autoimmunity and infection. _Nature_ 523, 612–616 (2015). CAS  PubMed  PubMed Central  Google Scholar  * Cully, M. T cell-regulating therapies for


autoimmune diseases take FDA rejection in stride. _Nat. Rev. Drug Discov._ 20, 655–657 (2021). CAS  PubMed  Google Scholar  * Mullard, A. PD1 agonist antibody passes first phase II trial for


autoimmune disease. _Nat. Rev. Drug Discov._ 22, 526 (2023). PubMed  Google Scholar  * Zhang, B. et al. Site-specific PEGylation of interleukin-2 enhances immunosuppression via the


sustained activation of regulatory T cells. _Nat. Biomed. Eng._ 5, 1288–1305 (2021). PubMed  Google Scholar  * Edner, N. M., Carlesso, G., Rush, J. S. & Walker, L. S. K. Targeting


co-stimulatory molecules in autoimmune disease. _Nat. Rev. Drug Discov._ 19, 860–883 (2020). CAS  PubMed  Google Scholar  * Herold, K. C. et al. Anti-CD3 monoclonal antibody in new-onset


type 1 diabetes mellitus. _N. Engl. J. Med._ 346, 1692–1698 (2002). CAS  PubMed  Google Scholar  * Cifuentes-Rius, A., Desai, A., Yuen, D., Johnston, A. P. R. & Voelcker, N. H. Inducing


immune tolerance with dendritic cell-targeting nanomedicines. _Nat. Nanotechnol._ 16, 37–46 (2021). CAS  PubMed  Google Scholar  * Audiger, C., Rahman, M. J., Yun, T. J., Tarbell, K. V.


& Lesage, S. The importance of dendritic cells in maintaining immune tolerance. _J. Immunol._ 198, 2223–2231 (2017). CAS  PubMed  Google Scholar  * Brown, C. C. & Rudensky, A. Y.


Spatiotemporal regulation of peripheral T cell tolerance. _Science_ 380, 472–478 (2023). CAS  PubMed  Google Scholar  * Kenison, J. E., Stevens, N. A. & Quintana, F. J. Therapeutic


induction of antigen-specific immune tolerance. _Nat. Rev. Immunol._ 24, 338–357 (2024). CAS  PubMed  Google Scholar  * Sugiura, D. et al. Restriction of PD-1 function by _cis_-PD-L1/CD80


interactions is required for optimal T cell responses. _Science_ 364, 558–566 (2019). CAS  PubMed  Google Scholar  * Oh, S. A. et al. PD-L1 expression by dendritic cells is a key regulator


of T-cell immunity in cancer. _Nat. Cancer_ 1, 681–691 (2020). CAS  PubMed  Google Scholar  * Giannoukakis, N., Phillips, B., Finegold, D., Harnaha, J. & Trucco, M. Phase I (safety)


study of autologous tolerogenic dendritic cells in type 1 diabetic patients. _Diabetes Care_ 34, 2026–2032 (2011). PubMed  PubMed Central  Google Scholar  * Morante-Palacios, O., Fondelli,


F., Ballestar, E. & Martínez-Cáceres, E. M. Tolerogenic dendritic cells in autoimmunity and inflammatory diseases. _Trends Immunol._ 42, 59–75 (2021). CAS  PubMed  Google Scholar  *


Zubizarreta, I. et al. Immune tolerance in multiple sclerosis and neuromyelitis optica with peptide-loaded tolerogenic dendritic cells in a phase 1b trial. _Proc. Natl Acad. Sci. USA_ 116,


8463–8470 (2019). CAS  PubMed  PubMed Central  Google Scholar  * Benham, H. et al. Citrullinated peptide dendritic cell immunotherapy in HLA risk genotype-positive rheumatoid arthritis


patients. _Sci. Transl. Med._ 7, 290ra87 (2015). PubMed  Google Scholar  * Passeri, L., Marta, F., Bassi, V. & Gregori, S. Tolerogenic dendritic cell-based approaches in autoimmunity.


_Int. J. Mol. Sci._ 22, 8415 (2021). CAS  PubMed  PubMed Central  Google Scholar  * Rurik, J. G. et al. CAR T cells produced in vivo to treat cardiac injury. _Science_ 375, 91–96 (2022). CAS


  PubMed  PubMed Central  Google Scholar  * Sahin, U., Karikó, K. & Türeci, Ö. mRNA-based therapeutics—developing a new class of drugs. _Nat. Rev. Drug Discov._ 13, 759–780 (2014). CAS 


PubMed  Google Scholar  * Hassett, K. J. et al. Impact of lipid nanoparticle size on mRNA vaccine immunogenicity. _J. Control. Release_ 335, 237–246 (2021). CAS  PubMed  Google Scholar  *


Pardi, N. et al. Zika virus protection by a single low-dose nucleoside-modified mRNA vaccination. _Nature_ 543, 248–251 (2017). CAS  PubMed  PubMed Central  Google Scholar  * Verbeke, R.,


Hogan, M. J., Loré, K. & Pardi, N. Innate immune mechanisms of mRNA vaccines. _Immunity_ 55, 1993–2005 (2022). CAS  PubMed  PubMed Central  Google Scholar  * Barbier, A. J., Jiang, A.


Y., Zhang, P., Wooster, R. & Anderson, D. G. The clinical progress of mRNA vaccines and immunotherapies. _Nat. Biotechnol._ 40, 840–854 (2022). CAS  PubMed  Google Scholar  * Wang, C.,


Zhao, C., Wang, W., Liu, X. & Deng, H. Biomimetic noncationic lipid nanoparticles for mRNA delivery. _Proc. Natl Acad. Sci. USA_ 120, e2311276120 (2023). CAS  PubMed  PubMed Central 


Google Scholar  * Kenjo, E. et al. Low immunogenicity of LNP allows repeated administrations of CRISPR-Cas9 mRNA into skeletal muscle in mice. _Nat. Commun._ 12, 7101 (2021). CAS  PubMed 


PubMed Central  Google Scholar  * Krienke, C. et al. A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis. _Science_ 371, 145–153 (2021). CAS  PubMed 


Google Scholar  * Wilson, E. et al. Efficacy and safety of an mRNA-based RSV PreF vaccine in older adults. _N. Engl. J. Med._ 389, 2233–2244 (2023). CAS  PubMed  Google Scholar  * Kauffman,


K. J. et al. Optimization of lipid nanoparticle formulations for mRNA delivery in vivo with fractional factorial and definitive screening designs. _Nano Lett._ 15, 7300–7306 (2015). CAS 


PubMed  Google Scholar  * Zhao, P. et al. Depletion of PD-1-positive cells ameliorates autoimmune disease. _Nat. Biomed. Eng._ 3, 292–305 (2019). CAS  PubMed  PubMed Central  Google Scholar


  * Wu, Y. et al. Omicron-specific mRNA vaccine elicits potent immune responses in mice, hamsters, and nonhuman primates. _Cell Res._ 32, 949–952 (2022). CAS  PubMed  PubMed Central  Google


Scholar  * Peng, Q. et al. PD-L1 on dendritic cells attenuates T cell activation and regulates response to immune checkpoint blockade. _Nat. Commun._ 11, 4835 (2020). CAS  PubMed  PubMed


Central  Google Scholar  * O’Shea, J. J., Laurence, A. & McInnes, I. B. Back to the future: oral targeted therapy for RA and other autoimmune diseases. _Nat. Rev. Rheumatol._ 9, 173–182


(2013). PubMed  PubMed Central  Google Scholar  * Kingsmore, K. M., Grammer, A. C. & Lipsky, P. E. Drug repurposing to improve treatment of rheumatic autoimmune inflammatory diseases.


_Nat. Rev. Rheumatol._ 16, 32–52 (2020). CAS  PubMed  Google Scholar  * Brand, D. D., Latham, K. A. & Rosloniec, E. F. Collagen-induced arthritis. _Nat. Protoc._ 2, 1269–1275 (2007). CAS


  PubMed  Google Scholar  * Wu, J. et al. TNF antagonist sensitizes synovial fibroblasts to ferroptotic cell death in collagen-induced arthritis mouse models. _Nat. Commun._ 13, 676 (2022).


CAS  PubMed  PubMed Central  Google Scholar  * Wirtz, S. et al. Chemically induced mouse models of acute and chronic intestinal inflammation. _Nat. Protoc._ 12, 1295–1309 (2017). CAS  PubMed


  Google Scholar  * Tang, C. et al. Suppression of IL-17F, but not of IL-17A, provides protection against colitis by inducing Treg cells through modification of the intestinal microbiota.


_Nat. Immunol._ 19, 755–765 (2018). CAS  PubMed  Google Scholar  * Van Assche, G. et al. Randomized, double-blind comparison of 4 mg/kg versus 2 mg/kg intravenous cyclosporine in severe


ulcerative colitis. _Gastroenterology_ 125, 1025–1031 (2003). PubMed  Google Scholar  * Sharpe, A. H. & Pauken, K. E. The diverse functions of the PD1 inhibitory pathway. _Nat. Rev.


Immunol._ 18, 153–167 (2018). CAS  PubMed  Google Scholar  * Breda, L. et al. In vivo hematopoietic stem cell modification by mRNA delivery. _Science_ 381, 436–443 (2023). CAS  PubMed 


PubMed Central  Google Scholar  * Kranz, L. M. et al. Systemic RNA delivery to dendritic cells exploits antiviral defence for cancer immunotherapy. _Nature_ 534, 396–401 (2016). PubMed 


Google Scholar  * Serra, P. & Santamaria, P. Antigen-specific therapeutic approaches for autoimmunity. _Nat. Biotechnol._ 37, 238–251 (2019). CAS  PubMed  Google Scholar  * Miller, S.


D., Turley, D. M. & Podojil, J. R. Antigen-specific tolerance strategies for the prevention and treatment of autoimmune disease. _Nat. Rev. Immunol._ 7, 665–677 (2007). CAS  PubMed 


Google Scholar  * Kurochkina, Y. et al. SAT0212 The safety and tolerability of intra-articular injection of tolerogenic dendritic cells in patients with rheumatoid arthritis: the preliminary


results. _Ann. Rheum. Dis._ 77, 966–967 (2018). Google Scholar  * Jauregui-Amezaga, A. et al. Intraperitoneal administration of autologous tolerogenic dendritic cells for refractory Crohn’s


disease: a phase I study. _J. Crohns Colitis_ 9, 1071–1078 (2015). PubMed  Google Scholar  * Dong, S. et al. The effect of low-dose IL-2 and Treg adoptive cell therapy in patients with type


1 diabetes. _JCI Insight_ 6, e147474 (2021). PubMed  PubMed Central  Google Scholar  * Raffin, C., Vo, L. T. & Bluestone, J. A. Treg cell-based therapies: challenges and perspectives.


_Nat. Rev. Immunol._ 20, 158–172 (2020). CAS  PubMed  Google Scholar  * Hirai, T. et al. Selective expansion of regulatory T cells using an orthogonal IL-2/IL-2 receptor system facilitates


transplantation tolerance. _J. Clin. Invest._ 131, e139991 (2021). PubMed  PubMed Central  Google Scholar  * Bluestone, J. A. & Tang, Q. Treg cells—the next frontier of cell therapy.


_Science_ 362, 154–155 (2018). CAS  PubMed  Google Scholar  * Murray, J. A. et al. Safety and tolerability of KAN-101, a liver-targeted immune tolerance therapy, in patients with coeliac


disease (ACeD): a phase 1 trial. _Lancet Gastroenterol. Hepatol._ 8, 735–747 (2023). CAS  PubMed  Google Scholar  * Tremain, A. C. et al. Synthetically glycosylated antigens for the


antigen-specific suppression of established immune responses. _Nat. Biomed. Eng._ 7, 1142–1155 (2023). CAS  PubMed  Google Scholar  * Kelly, C. P. et al. TAK-101 nanoparticles induce


gluten-specific tolerance in celiac disease: a randomized, double-blind, placebo-controlled study. _Gastroenterology_ 161, 66–80.e8 (2021). CAS  PubMed  Google Scholar  * Tsai, S. et al.


Reversal of autoimmunity by boosting memory-like autoregulatory T cells. _Immunity_ 32, 568–580 (2010). CAS  PubMed  Google Scholar  * Singha, S. et al. Peptide-MHC-based nanomedicines for


autoimmunity function as T-cell receptor microclustering devices. _Nat. Nanotechnol._ 12, 701–710 (2017). CAS  PubMed  Google Scholar  * Baden, L. R. et al. Efficacy and safety of the


mRNA-1273 SARS-CoV-2 vaccine. _N. Engl. J. Med._ 384, 403–416 (2021). CAS  PubMed  Google Scholar  * Katakura, K. et al. Toll-like receptor 9–induced type I IFN protects mice from


experimental colitis. _J. Clin. Invest._ 115, 695–702 (2005). CAS  PubMed  PubMed Central  Google Scholar  * Moskowitz, R. W. Osteoarthritis cartilage histopathology: grading and staging.


_Osteoarthr. Cartil._ 14, 13–29 (2006). Google Scholar  Download references ACKNOWLEDGEMENTS This work was supported by the National Natural Science Foundation of China (52025036 to Y.W.,


82173390 to M.L. and 52495014 to Y.W.), the National Key R&D Program of China (2020YFA0710700 and 2022YFC2303300 to Y.W.), the Strategic Priority Research Program of the Chinese Academy


of Sciences (XDB0490000 and XDB0940303 to Y.W.), the Anhui Provincial Key Research and Development Project (2023s07020019 to Y.W.), the Anhui Provincial Major Science and Technology Project


(202303a07020010 to Y.W.), the Anhui Provincial Natural Science Foundation (2408085J042 to M.L.), the project of collaborative innovation for colleges of Anhui province (GXXT-2022-063 to


M.L.) and the USTC Research Funds of the Double First-Class Initiative (YD9100002054 to Y.W. and YD9110002021 to M.L.). This work was partially carried out at the USTC Center for Micro and


Nanoscale Research and Fabrication. This work was partially carried out at the Instruments Center for Physical Science, University of Science and Technology of China. AUTHOR INFORMATION


Author notes * These authors contributed equally: Yang Liu, Qian Liu, Baowen Zhang. AUTHORS AND AFFILIATIONS * Department of Radiology, the First Affiliated Hospital of University of Science


and Technology of China, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China Yang Liu, Qian Liu, Shanshan Chen, Min Li & Yucai Wang *


National Key Laboratory of Immune Response and Immunotherapy, School of Basic Medical Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei,


China Yang Liu, Qian Liu, Baowen Zhang, Yanqiong Shen, Zhibin Li, Jiachen Zhang, Min Li & Yucai Wang * Institute of Health and Medicine, Hefei Comprehensive National Science Center,


Hefei, China Yanqiong Shen & Yucai Wang * RNAlfa Biotech, Hefei, China Yanqiong Shen, Yi Yang & Yucai Wang * Key Laboratory of Anhui Province for Emerging and Reemerging Infectious


Diseases, Hefei, China Min Li & Yucai Wang Authors * Yang Liu View author publications You can also search for this author inPubMed Google Scholar * Qian Liu View author publications You


can also search for this author inPubMed Google Scholar * Baowen Zhang View author publications You can also search for this author inPubMed Google Scholar * Shanshan Chen View author


publications You can also search for this author inPubMed Google Scholar * Yanqiong Shen View author publications You can also search for this author inPubMed Google Scholar * Zhibin Li View


author publications You can also search for this author inPubMed Google Scholar * Jiachen Zhang View author publications You can also search for this author inPubMed Google Scholar * Yi


Yang View author publications You can also search for this author inPubMed Google Scholar * Min Li View author publications You can also search for this author inPubMed Google Scholar *


Yucai Wang View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS Y.W., M.L., Y.L. and Q.L. conceptualized and designed the research. Y.L., Q.L.,


B.Z., S.C., Y.S., Z.L., J.Z. and Y.Y. performed the experiments. S.C. provided help in designing LNP formulations. Y.L., Q.L. and B.Z. analysed the experimental data. Y.L., M.L., Q.L., B.Z.


and Y.W. prepared the figures and wrote the paper. Y.W. supervised the project. CORRESPONDING AUTHORS Correspondence to Min Li or Yucai Wang. ETHICS DECLARATIONS COMPETING INTERESTS The


authors declare no competing interests. PEER REVIEW PEER REVIEW INFORMATION _Nature Biomedical Engineering_ thanks Jeffrey Hubbell, Tianmeng Sun and the other, anonymous, reviewer(s) for


their contribution to the peer review of this work. Peer reviewer reports are available. ADDITIONAL INFORMATION PUBLISHER’S NOTE Springer Nature remains neutral with regard to jurisdictional


claims in published maps and institutional affiliations. EXTENDED DATA EXTENDED DATA FIG. 1 IN VIVO-PRODUCED TOL-APCS INHIBIT RA PROGRESSION. A, Statistical data of OARSI score. B, C, The


percentage of IFN-γ+ (B) and TNF-α+ (C) area per FOV. D, Representative images of CD4, CD8, and Foxp3 staining from the knee joint of one mouse in a group of four. Scale bar = 200 µm. Arrows


refer to Foxp3+ cells. E-G, Number of CD4+ (E), CD8+ (F) and Foxp3+ (G) cells per FOV. RA mice were subcutaneously treated with PBS, LNPs, or LNPs/mPDL1 (5 μg mRNA) at the lower right back.


Mice treated with iTNF-α served as the positive control group. Normal group comprises healthy mice. _n_ = 4 biologically independent mice per group for data in A-C and E-G. Data are


expressed as the mean ± s.e.m. Statistical significances were determined using one-way ANOVA with Dunnett’s post hoc test. Comparisons were performed between the LNPs/mPDL1 group and each of


the other groups. N.S. is _P_ ≥ 0.05, and significant _P_ values are displayed. Source data EXTENDED DATA FIG. 2 IN VIVO-PRODUCED TOL-APCS MEDIATE POTENT THERAPEUTIC EFFECTS IN DSS-INDUCED


UC MICE. A, Representative images of CD8, Foxp3, IFN-γ, and TNF-α staining from the colon of one mouse in a group of four. Arrows refer to Foxp3+ cells. Scale bar = 200 µm. B-E, The number


of CD8+ (B) and Foxp3+ (C) cells and the percentage of IFN-γ+ (D) and TNF-α+ (E) area per FOV. Mice were treated with PBS, LNPs, or LNPs/mPDL1 (5 μg mRNA) via subcutaneous injection at the


lower right back. Mice treated with cyclosporine served as the positive control group. Normal group comprises healthy mice. _n_ = 4 biologically independent mice per group for data in B-E.


Data are expressed as the mean ± s.e.m. Statistical significances were determined using one-way ANOVA with Dunnett’s post hoc test. Comparisons were performed between the LNPs/mPDL1 group


and each of the other groups. N.S. is _P_ ≥ 0.05, and significant _P_ values are displayed. Source data SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Supplementary figures and tables.


REPORTING SUMMARY PEER REVIEW FILE SUPPLEMENTARY DATA Source data for the supplementary figures. SOURCE DATA SOURCE DATA FIGS. 2–7 AND EXTENDED DATA FIGS. 1 AND 2 Statistical source data.


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permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Liu, Y., Liu, Q., Zhang, B. _et al._ Generation of tolerogenic antigen-presenting cells in vivo via the delivery of mRNA encoding PDL1 within


lipid nanoparticles. _Nat. Biomed. Eng_ (2025). https://doi.org/10.1038/s41551-025-01373-0 Download citation * Received: 08 January 2024 * Accepted: 27 February 2025 * Published: 28 March


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