Isolation and structure elucidation of thiazomycin

Isolation and structure elucidation of thiazomycin


Play all audios:


ABSTRACT Thiazolyl peptides are a class of rigid macrocyclic compounds richly populated with thiazole rings. They are highly potent antibiotics but none have been advanced to clinic due to


poor aqueous solubility. Recent progress in this field prompted a reinvestigation leading to the isolation of a new thiazolyl peptide, thiazomycin, a congener of nocathiacins. Thiazomycin


possesses an oxazolidine ring as part of the amino-sugar moiety in contrast to the dimethyl amino group present in nocathiacin I. The presence of the oxazolidine ring provides additional


opportunities for chemical modifications that are not possible with other nocathiacins. Thiazomycin is extremely potent against Gram-positive bacteria both _in vitro_ and _in vivo_. The


titer of thiazomycin in the fermentation broth was very low compared to the nocathiacins I and III. The lower titer together with its sandwiched order of elution presented significant


challenges in large scale purification of thiazomycin. This problem was resolved by the development of an innovative preferential protonation based one- and/or two-step chromatographic


method, which was used for pilot plant scale purifications of thiazomycin. The isolation and structure elucidation of thiazomycin is herein described. SIMILAR CONTENT BEING VIEWED BY OTHERS


THIOPEPTIDES: ANTIBIOTICS WITH UNIQUE CHEMICAL STRUCTURES AND DIVERSE BIOLOGICAL ACTIVITIES Article 21 December 2020 TOTAL SYNTHESIS AND ANTIMICROBIAL EVALUATION OF (+)-HYGROPHORONE B12 AND


ITS ANALOGUES Article Open access 06 May 2022 TOTAL SYNTHESIS OF STRUCTURALLY DIVERSE PLEUROMUTILIN ANTIBIOTICS Article 26 September 2022 ARTICLE PDF REFERENCES * Walsh CT . Antibiotics:


Actions, Origin, Resistance. ASM Press, Washington DC, ( 2003) * Singh SB, Barrett JF . Empirical antibacterial drug discovery—foundation in natural products. _Biochem Pharmacol_ 71:


1006–1015 ( 2006) Article  CAS  PubMed  Google Scholar  * Singh SB, Jayasuriya H, Ondeyka JG, Herath KB, Zhang C, Zink DL, Tsou NN, Ball RG, Basilio A, Genilloud O, Diez MT, Vicente F,


Pelaez F, Young K, Wang J . Isolation, structure, and absolute stereochemistry of platensimycin, a broad spectrum antibiotic discovered using an antisense differential sensitivity strategy.


J Am Chem Soc 128: 11916–11920 and 15547 ( 2006) Article  CAS  PubMed  Google Scholar  * Wang J, Soisson SM, Young K, Shoop W, Kodali S, Galgoci A, Painter R, Parthasarathy G, Tang YS,


Cummings R, Ha S, Dorso K, Motyl M, Jayasuriya H, Ondeyka J, Herath K, Zhang C, Hernandez L, Allocco J, Basilio A, Tormo JR, Genilloud O, Vicente F, Pelaez F, Colwell L, Lee SH, Michael B,


Felcetto T, Gill C, Silver LL, Hermes JD, Bartizal K, Barrett J, Schmatz D, Becker JW, Cully D, Singh SB . Platensimycin is a selective FabF inhibitor with potent antibiotic properties.


_Nature_ 441: 358–361 ( 2006) Article  CAS  PubMed  Google Scholar  * Wang J, Kodali S, Lee SH, Galgoci A, Painter R, Dorso K, Racine F, Motyl M, Hernandez L, Tinney E, Colletti S, Herath K,


Cummings R, Salazar O, Gonzalez I, Basilio A, Vicente F, Genilloud O, Pelaez F, Jayasuriya H, Young K, Cully D, Singh SB . Platencin is a dual fabf and fabh inhibitor with potent _in vivo_


antibiotic properties. _Proc Natl Acad Sci USA_ 104: 7612–7616 ( 2007) Article  CAS  PubMed  PubMed Central  Google Scholar  * Jayasuriya H, Herath KB, Zhang C, Zink DL, Basilio A, Genilloud


O, Diez MT, Vicente F, Gonzalez I, Salazar O, Pelaez F, Cummings R, Ha S, Wang J, Singh SB . Isolation and structure of platencin: A novel FabH and FabF dual inhibitor with potent broad


spectrum antibiotic activity produced by _Streptomyces platensis_ MA7339. _Angew Chem Int Ed Engl_ 46: 4684–4688 ( 2007) Article  CAS  PubMed  Google Scholar  * Bagley MC, Dale JW, Merritt


EA, Xiong X . Thiopeptide antibiotics. _Chem Rev_ 105: 685–714 ( 2005) Article  CAS  PubMed  Google Scholar  * Hensens OD, Albers-Schonberg G . 13C NMR study of thiostrepton and thiopeptin


components. _J Antibiot_ 36: 832–845 ( 1983) Article  CAS  Google Scholar  * Hensens OD, Albers-Schonberg G, Anderson BF . The solution conformation of the peptide antibiotic thiostrepton: a


1H NMR study. _J Antibiot_ 36: 799–813 ( 1983) Article  CAS  Google Scholar  * Northcote PT, Siegel M, Borders DB, Lee MD . Glycothiohexide alpha, a novel antibiotic produced by “Sebekia”


sp., LL-14E605. III. Structural elucidation. _J Antibiot_ 47: 901–908 ( 1994) Article  CAS  Google Scholar  * Northcote PT, Williams D, Manning JK, Borders DB, Maiese WM, Lee MD .


Glycothiohexide alpha, a novel antibiotic produced by “Sebekia” sp., LL-14E605. II. Isolation and physical-chemical characterization. _J Antibiot_ 47: 894–900 ( 1994) Article  CAS  Google


Scholar  * Sasaki T, Otani T, Matsumoto H, Unemi N, Hamada M, Takeuchi T, Hori M . MJ347-81F4 A and B, novel antibiotics from _Amycolatopsis_ sp.: Taxonomic characteristics, fermentation,


and antimicrobial activity. _J Antibiot_ 51: 715–721 ( 1998) Article  CAS  Google Scholar  * Li W, Leet JE, Ax HA, Gustavson DR, Brown DM, Turner L, Brown K, Clark J, Yang H, Fung-Tomc J,


Lam KS . Nocathiacins, new thiazolyl peptide antibiotics from _Nocardia_ sp. I. Taxonomy, fermentation and biological activities. _J Antibiot_ 56: 226–231 ( 2003) Article  CAS  Google


Scholar  * Constantine KL, Mueller L, Huang S, Abid S, Lam KS, Li W, Leet JE . Conformation and absolute configuration of nocathiacin I determined by NMR spectroscopy and chiral capillary


electrophoresis. _J Am Chem Soc_ 124: 7284–7285 ( 2002) Article  CAS  PubMed  Google Scholar  * Connolly TP, Regueiro-Ren A, Leet JE, Springer DM, Goodrich J, Huang XS, Pucci MJ, Clark JM,


Bronson JJ, Ueda Y . Chemical conversion of nocathiacin I to nocathiacin II and a lactone analogue of glycothiohexide alpha. _J Nat Prod_ 68: 550–553 ( 2005) Article  CAS  PubMed  Google


Scholar  * Hrnciar P, Ueda Y, Huang S, Leet JE, Bronson JJ . Synthesis of novel nocathiacin-class antibiotics. Condensation of glycolaldehyde with primary amides and tandem reductive


amination of amadori-rearranged 2-oxoethyl intermediates. _J Org Chem_ 67: 8789–8793 ( 2002) Article  CAS  PubMed  Google Scholar  * Naidu BN, Sorenson ME, Zhang Y, Kim OK, Matiskella JD,


Wichtowski JA, Connolly TP, Li W, Lam KS, Bronson JJ, Pucci MJ, Clark JM, Ueda Y . Nocathiacin I analogues: synthesis, _in vitro_ and _in vivo_ biological activity of novel semi-synthetic


thiazolyl peptide antibiotics. _Bioorg Med Chem Lett_ 14: 5573–5577 ( 2004) Article  CAS  PubMed  Google Scholar  * Naidu BN, Sorenson ME, Hudyma T, Zheng X, Zhang Y, Bronson JJ, Pucci MJ,


Clark JM, Ueda Y . Synthesis and antibacterial activity of _O_-substituted nocathiacin I derivatives. _Bioorg Med Chem Lett_ 14: 3743–3746 ( 2004) Article  CAS  PubMed  Google Scholar  *


Naidu BN, Sorenson ME, Bronson JJ, Pucci MJ, Clark JM, Ueda Y . Synthesis, _in vitro_, and _in vivo_ antibacterial activity of nocathiacin I thiol-Michael adducts. _Bioorg Med Chem Lett_ 15:


2069–2072 ( 2005) Article  CAS  PubMed  Google Scholar  * Naidu BN, Sorenson ME, Matiskella JD, Li W, Sausker JB, Zhang Y, Connolly TP, Lam KS, Bronson JJ, Pucci MJ, Yang H, Ueda Y .


Synthesis and antibacterial activity of nocathiacin I analogues. _Bioorg Med Chem Lett_ 16: 3545–3549 ( 2006) Article  CAS  PubMed  Google Scholar  * Pucci MJ, Bronson JJ, Barrett JF,


DenBleyker KL, Discotto LF, Fung-Tomc JC, Ueda Y . Antimicrobial evaluation of nocathiacins, a thiazole peptide class of antibiotics. _Antimicrob Agents Chemother_ 48: 3697–3701 ( 2004)


Article  CAS  PubMed  PubMed Central  Google Scholar  * Regueiro-Ren A, Ueda Y . Mild method for cleavage of dehydroalanine units: highly efficient conversion of nocathiacin I to nocathiacin


IV. _J Org Chem_ 67: 8699–8702 ( 2002) Article  CAS  PubMed  Google Scholar  * Regueiro-Ren A, Naidu BN, Zheng X, Hudyma TW, Connolly TP, Matiskella JD, Zhang Y, Kim OK, Sorenson ME, Pucci


M, Clark J, Bronson JJ, Ueda Y . Novel semi-synthetic nocathiacin antibiotics: synthesis and antibacterial activity of bis- and mono-_O_-alkylated derivatives. _Bioorg Med Chem Lett_ 14:


171–175 ( 2004) Article  CAS  PubMed  Google Scholar  * Singh SB, Occi J, Jayasuriya H, Herath K, Motyl M, Dorso K, Gill C, Hickey E, Overbye K, Barrett JF, Masurekar P . Antibacterial


evaluations of thiazomycin—A potent thiazolyl peptide antibiotic from a _Amycolatopsis fastidiosa_. _J Antibiot_ 60: 565–571 ( 2007) Article  CAS  Google Scholar  * Salazar O, Valverde A,


Genilloud O . Real-time PCR for the detection and quantification of geodermatophilaceae from stone samples and identification of new members of the genus _Blastococcus_. _Appl Environ


Microbiol_ 72: 346–352 ( 2006) Article  CAS  PubMed  PubMed Central  Google Scholar  * Thompson JD, Higgins DG, Gibson TJ . CLUSTAL W: improving the sensitivity of progressive multiple


sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. _Nucleic Acids Res_ 22: 4673–4680 ( 1994) Article  CAS  PubMed  PubMed Central 


Google Scholar  * Felsenstein J . Evolutionary trees from DNA sequences: a maximum likelihood approach. _J Mol Evol_ 17: 368–376 ( 1981) Article  CAS  PubMed  Google Scholar  * Junker B,


Seeley A, Lester M, Kovatch M, Schmitt J, Borysewicz S, Lynch J, Zhang J, Greasham R . Use of frozen bagged seed inoculum for secondary metabolite and bioconversion processes at the pilot


scale. _Biotechnol Bioeng_ 79: 628–640 ( 2002) Article  CAS  PubMed  Google Scholar  Download references AUTHOR INFORMATION Author notes * John F Barrett: Deceased AUTHORS AND AFFILIATIONS *


Merck Research Laboratories, Rahway, New Jersey, USA Hiranthi Jayasuriya, Kithsiri Herath, John G Ondeyka, Chaowei Zhang, Deborah L Zink, Mark Brower, Francis P Gailliot, Joyce Greene, 


Gwyneth Birdsall, Jayashree Venugopal, Misti Ushio, Bruce Burgess, Greg Russotti, Andre Walker, Michelle Hesse, Anna Seeley, Beth Junker, Neal Connors, Kun Liu, Prakash Masurekar & Sheo


B Singh * Centro de Investigación Básica, Merck Sharp & Dohme de España, S. A. Josefa Valcárcel 38, Madrid, 28027, Spain Oscar Salazar & Olga Genilloud Authors * Hiranthi Jayasuriya


View author publications You can also search for this author inPubMed Google Scholar * Kithsiri Herath View author publications You can also search for this author inPubMed Google Scholar *


John G Ondeyka View author publications You can also search for this author inPubMed Google Scholar * Chaowei Zhang View author publications You can also search for this author inPubMed 


Google Scholar * Deborah L Zink View author publications You can also search for this author inPubMed Google Scholar * Mark Brower View author publications You can also search for this


author inPubMed Google Scholar * Francis P Gailliot View author publications You can also search for this author inPubMed Google Scholar * Joyce Greene View author publications You can also


search for this author inPubMed Google Scholar * Gwyneth Birdsall View author publications You can also search for this author inPubMed Google Scholar * Jayashree Venugopal View author


publications You can also search for this author inPubMed Google Scholar * Misti Ushio View author publications You can also search for this author inPubMed Google Scholar * Bruce Burgess


View author publications You can also search for this author inPubMed Google Scholar * Greg Russotti View author publications You can also search for this author inPubMed Google Scholar *


Andre Walker View author publications You can also search for this author inPubMed Google Scholar * Michelle Hesse View author publications You can also search for this author inPubMed 


Google Scholar * Anna Seeley View author publications You can also search for this author inPubMed Google Scholar * Beth Junker View author publications You can also search for this author


inPubMed Google Scholar * Neal Connors View author publications You can also search for this author inPubMed Google Scholar * Oscar Salazar View author publications You can also search for


this author inPubMed Google Scholar * Olga Genilloud View author publications You can also search for this author inPubMed Google Scholar * Kun Liu View author publications You can also


search for this author inPubMed Google Scholar * Prakash Masurekar View author publications You can also search for this author inPubMed Google Scholar * John F Barrett View author


publications You can also search for this author inPubMed Google Scholar * Sheo B Singh View author publications You can also search for this author inPubMed Google Scholar CORRESPONDING


AUTHOR Correspondence to Sheo B Singh. RIGHTS AND PERMISSIONS Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Jayasuriya, H., Herath, K., Ondeyka, J. _et al._ Isolation and


Structure Elucidation of Thiazomycin. _J Antibiot_ 60, 554–564 (2007). https://doi.org/10.1038/ja.2007.70 Download citation * Received: 02 June 2007 * Accepted: 17 August 2007 * Issue Date:


01 September 2007 * DOI: https://doi.org/10.1038/ja.2007.70 SHARE THIS ARTICLE Anyone you share the following link with will be able to read this content: Get shareable link Sorry, a


shareable link is not currently available for this article. Copy to clipboard Provided by the Springer Nature SharedIt content-sharing initiative KEYWORDS * antibiotics * thiazolyl peptide *


protein synthesis inhibitors * natural products